Agrogenom3
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Clade Ancestor
Agrobacterium - [ N11 ] - ( genus )
Agrobacterium fabrum - [ N32 ] - ( species )
Agrobacterium fabrum - [ N36 ] - ( species subclade )
Agrobacterium fabrum str. C58 - [ AGRT5 ] - ( no rank )
Agrobacterium fabrum str. J-07 - [ ATU8A ] - ( no rank )
Agrobacterium genomosp. 1 - [ N35 ] - ( species )
Agrobacterium genomosp. 1 - [ N40 ] - ( species subclade )
Agrobacterium genomosp. 1 - [ N41 ] - ( species subclade )
Agrobacterium genomosp. 1 - [ N45 ] - ( species subclade )
Agrobacterium genomosp. 1 str. S56 - [ ATU1B ] - ( no rank )
Agrobacterium genomosp. 1 str. TT111 - [ ATU1C ] - ( no rank )
Agrobacterium genomosp. 13 str. CFBP 6927 - [ ATU13 ] - ( no rank )
Agrobacterium genomosp. 2 str. CFBP 5494 - [ ATU2A ] - ( no rank )
Agrobacterium genomosp. 3 str. CFBP 6623 - [ ATU3A ] - ( no rank )
Agrobacterium genomosp. 5 str. CFBP 6626 - [ ATU5A ] - ( no rank )
Agrobacterium genomosp. 6 str. NCPPB 925 - [ ATU6A ] - ( no rank )
Agrobacterium genomosp. 7 - [ N42 ] - ( species )
Agrobacterium genomosp. 7 - [ N46 ] - ( species subclade )
Agrobacterium genomosp. 7 str. NCPPB 1641 - [ ATU7A ] - ( no rank )
Agrobacterium genomosp. 7 str. RV3 - [ ATU7B ] - ( no rank )
Agrobacterium genomosp. 7 str. Zutra 3/1 - [ ATU7C ] - ( no rank )
Agrobacterium genomosp. 9 str. Hayward 0363 - [ ATU9A ] - ( no rank )
Agrobacterium radiobacter K84 - [ AGRRK ] - ( no rank )
Agrobacterium sp. ATCC 31749 - [ AGRSP1 ] - ( species )
Agrobacterium sp. H13-3 - [ AGRSH ] - ( species )
Agrobacterium tumefaciens - [ N38 ] - ( species )
Agrobacterium tumefaciens - [ N43 ] - ( species subclade )
Agrobacterium tumefaciens - [ N44 ] - ( species subclade )
Agrobacterium tumefaciens 5A - [ AGRTU1 ] - ( no rank )
Agrobacterium tumefaciens CCNWGS0286 - [ AGRTU2 ] - ( no rank )
Agrobacterium tumefaciens F2 - [ AGRTU3 ] - ( no rank )
Agrobacterium tumefaciens complex - [ N15 ] - ( species group )
Agrobacterium tumefaciens complex - [ N21 ] - ( species group subclade )
Agrobacterium tumefaciens complex - [ N22 ] - ( species group subclade )
Agrobacterium tumefaciens complex - [ N27 ] - ( species group subclade )
Agrobacterium tumefaciens complex - [ N28 ] - ( species group subclade )
Agrobacterium tumefaciens complex - [ N29 ] - ( species group subclade )
Agrobacterium tumefaciens complex - [ N33 ] - ( species group subclade )
Agrobacterium tumefaciens complex - [ N34 ] - ( species group subclade )
Agrobacterium tumefaciens complex - [ N37 ] - ( species group subclade )
Agrobacterium tumefaciens complex - [ N39 ] - ( species group subclade )
Agrobacterium tumefaciens str. B6 - [ ATU4A ] - ( no rank )
Agrobacterium tumefaciens str. CFBP 5621 - [ ATU4B ] - ( no rank )
Agrobacterium tumefaciens str. CFBP 5771 - [ ATU1A ] - ( no rank )
Agrobacterium tumefaciens str. Kerr 14 - [ ATU4C ] - ( no rank )
Agrobacterium vitis - [ N16 ] - ( species )
Agrobacterium vitis S4 - [ AGRVS ] - ( no rank )
Chelativorans sp. BNC1 - [ MESSB ] - ( species )
Mesorhizobium - [ N12 ] - ( genus )
Mesorhizobium - [ N17 ] - ( genus subclade )
Mesorhizobium - [ N23 ] - ( genus subclade )
Mesorhizobium - [ N30 ] - ( genus subclade )
Mesorhizobium - [ N7 ] - ( genus subclade )
Mesorhizobium alhagi CCNWXJ12-2 - [ MESAL1 ] - ( no rank )
Mesorhizobium amorphae CCNWGS0123 - [ MESAM1 ] - ( no rank )
Mesorhizobium australicum WSM2073 - [ MESAU1 ] - ( no rank )
Mesorhizobium ciceri biovar biserrulae WSM1271 - [ MESCW ] - ( no rank )
Mesorhizobium loti MAFF303099 - [ RHILO ] - ( no rank )
Mesorhizobium opportunistum WSM2075 - [ MESOW ] - ( no rank )
Parvibaculum lavamentivorans DS-1 - [ PARL1 ] - ( no rank )
Phyllobacteriaceae - [ N4 ] - ( family )
Rhizobiaceae - [ N3 ] - ( family )
Rhizobiales - [ N1 ] - ( order )
Rhizobiales - [ N2 ] - ( order subclade )
Rhizobium - [ N10 ] - ( genus )
Rhizobium - [ N14 ] - ( genus subclade )
Rhizobium etli - [ N19 ] - ( species )
Rhizobium etli - [ N25 ] - ( species subclade )
Rhizobium etli CFN 42 - [ RHIEC ] - ( no rank )
Rhizobium etli CIAT 652 - [ RHIE6 ] - ( no rank )
Rhizobium etli CNPAF512 - [ RHIET1 ] - ( no rank )
Rhizobium leguminosarum - [ N20 ] - ( species )
Rhizobium leguminosarum - [ N26 ] - ( species subclade )
Rhizobium leguminosarum bv. trifolii WSM1325 - [ RHILS ] - ( no rank )
Rhizobium leguminosarum bv. trifolii WSM2304 - [ RHILW ] - ( no rank )
Rhizobium leguminosarum bv. viciae 3841 - [ RHIL3 ] - ( no rank )
Rhizobium sp. PDO1-076 - [ RHISP1 ] - ( species )
Rhizobium/Agrobacterium group - [ N6 ] - ( no rank )
Sinorhizobium - [ N5 ] - ( genus )
Sinorhizobium - [ N8 ] - ( genus subclade )
Sinorhizobium fredii - [ N9 ] - ( species )
Sinorhizobium fredii HH103 - [ SINFR1 ] - ( no rank )
Sinorhizobium fredii NGR234 - [ RHISN ] - ( no rank )
Sinorhizobium medicae WSM419 - [ SINMW ] - ( no rank )
Sinorhizobium meliloti - [ N13 ] - ( species )
Sinorhizobium meliloti - [ N18 ] - ( species subclade )
Sinorhizobium meliloti - [ N24 ] - ( species subclade )
Sinorhizobium meliloti - [ N31 ] - ( species subclade )
Sinorhizobium meliloti 1021 - [ RHIME ] - ( no rank )
Sinorhizobium meliloti AK83 - [ SINMK ] - ( no rank )
Sinorhizobium meliloti BL225C - [ SINMB ] - ( no rank )
Sinorhizobium meliloti CCNWSX0020 - [ SINME1 ] - ( no rank )
Sinorhizobium meliloti SM11 - [ SINMM ] - ( no rank )
Node of reference phylogeny where the gain/loss event happened or defining the clade where the gene presence/absence is considered.
Criterion
specific_presence
specific_absence
gain
loss
universal_unicopy
core
Specific presence/absence is defined as a presence/absence state homogeneous in the clade and contrasting with that of the close relatives.
Relaxed Specificity
0
45
In how many other strains from distant (non-sister) clades does this presence/absence state occur.
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